RABIES
Getting started
Tutorial
Your first RABIES run
What you will end up with
Step 1: Install the container
Step 2: Get the example data
Step 3: Preprocess
Step 4: Look at the registration quality control report
Step 5: Correct confounds
Step 6: Analyse
What you have done
Where to go next
How-to guides
How-to guides
Getting RABIES running
How to install RABIES
How to handle container syntax
How to select which scans get processed
How to override the default common space template
Getting good results out of it
How to check image orientation
How to troubleshoot registration
How to assess data quality
How to optimise your confound correction strategy
How to use RABIES on already-preprocessed data
Contributing
How to contribute to RABIES
Reference
Reference
Running RABIES
Input data requirements
Built-in commonspace template and atlas
Command line interface
What RABIES produces
Output files
Preprocessing QC outputs
Metric definitions
Internals
Workflow reference
Bibliography
Explanation
Explanation
The processing stages
The preprocessing workflow
The confound correction workflow
Connectivity analysis
Assessing data quality
Overview of data quality assessment
The spatiotemporal diagnosis
QC-FC distribution
The group statistical report
RABIES
Index
Index