# Reference

Descriptive, factual material to consult while you work. Reference pages
describe how RABIES behaves; they do not tell you what to do. For that, see the
[how-to guides](../how_to/index.md).

## Running RABIES

```{toctree}
---
maxdepth: 1
---
bids_inputs
template_files
cli
```

## What RABIES produces

```{toctree}
---
maxdepth: 1
---
outputs
qc_outputs
metrics
```

## Internals

```{toctree}
---
maxdepth: 1
---
workflows
bibliography
```